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Distance matrix. In mathematics, computer science and especially graph theory, a distance matrix is a square matrix (two-dimensional array) containing the distances, taken pairwise, between the elements of a set. [1] Depending upon the application involved, the distance being used to define this matrix may or may not be a metric. If there are N ...
Cluster analysis, a fundamental task in data mining and machine learning, involves grouping a set of data points into clusters based on their similarity. k -means clustering is a popular algorithm used for partitioning data into k clusters, where each cluster is represented by its centroid.
Cluster analysis or clustering is the task of grouping a set of objects in such a way that objects in the same group (called a cluster) are more similar (in some specific sense defined by the analyst) to each other than to those in other groups (clusters). It is a main task of exploratory data analysis, and a common technique for statistical ...
The definition of 'shortest distance' is what differentiates between the different agglomerative clustering methods. In complete-linkage clustering, the link between two clusters contains all element pairs, and the distance between clusters equals the distance between those two elements (one in each cluster) that are farthest away from each other.
Jaccard distance is commonly used to calculate an n × n matrix for clustering and multidimensional scaling of n sample sets. This distance is a metric on the collection of all finite sets. [8] [9] [10] There is also a version of the Jaccard distance for measures, including probability measures.
Ward's method. In statistics, Ward's method is a criterion applied in hierarchical cluster analysis. Ward's minimum variance method is a special case of the objective function approach originally presented by Joe H. Ward, Jr. [1] Ward suggested a general agglomerative hierarchical clustering procedure, where the criterion for choosing the pair ...
The UPGMA algorithm constructs a rooted tree (dendrogram) that reflects the structure present in a pairwise similarity matrix (or a dissimilarity matrix). At each step, the nearest two clusters are combined into a higher-level cluster. The distance between any two clusters and , each of size (i.e., cardinality) and , is taken to be the average ...
k -medoids. The k-medoids problem is a clustering problem similar to k -means. The name was coined by Leonard Kaufman and Peter J. Rousseeuw with their PAM (Partitioning Around Medoids) algorithm. [ 1 ] Both the k -means and k -medoids algorithms are partitional (breaking the dataset up into groups) and attempt to minimize the distance between ...